PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01565.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-X1
Protein Properties Length: 1126aa    MW: 122226 Da    PI: 8.1047
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01565.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.31.1e-05326344119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H+C+++CH GpC+ C+
  Sme2.5_01565.1_g00004.1 326 CGRHRCEQTCHVGPCGHCQ 344
                              ******************7 PP

2zf-NF-X117.21.1e-05390407118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG+H C +lCH+GpC+ C
  Sme2.5_01565.1_g00004.1 390 CGNHVCRELCHPGPCGDC 407
                              ****************99 PP

3zf-NF-X1162.6e-05448465118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG H C++ CH G+C pC
  Sme2.5_01565.1_g00004.1 448 CGVHHCEAVCHSGDCAPC 465
                              ****************** PP

4zf-NF-X118.64.1e-06544562119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H+C++lCH G CppC 
  Sme2.5_01565.1_g00004.1 544 CGQHSCESLCHSGHCPPCL 562
                              ******************6 PP

5zf-NF-X118.15.8e-06654669116
                 zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                              CG H C ++CH+ pC+
  Sme2.5_01565.1_g00004.1 654 CGLHACARTCHPSPCD 669
                              ***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.62E-5147218No hitNo description
PROSITE profilePS500168.716156217IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590159214IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.978159215IPR001841Zinc finger, RING-type
CDDcd060082.50E-6248309No hitNo description
SMARTSM004380.023271289IPR000967Zinc finger, NF-X1-type
PfamPF014228.4273288IPR000967Zinc finger, NF-X1-type
CDDcd060085.39E-12316364No hitNo description
SMARTSM004380.021326345IPR000967Zinc finger, NF-X1-type
PfamPF014227.7E-4326343IPR000967Zinc finger, NF-X1-type
CDDcd060082.57E-9380425No hitNo description
SMARTSM004381.1E-4390409IPR000967Zinc finger, NF-X1-type
PfamPF014222.8E-4390407IPR000967Zinc finger, NF-X1-type
CDDcd060081.69E-13438486No hitNo description
SMARTSM004383.0E-4448467IPR000967Zinc finger, NF-X1-type
PfamPF014229.6E-5448465IPR000967Zinc finger, NF-X1-type
SMARTSM00438180506540IPR000967Zinc finger, NF-X1-type
PfamPF0142219506517IPR000967Zinc finger, NF-X1-type
CDDcd060082.31E-9534586No hitNo description
SMARTSM004382.0E-4544563IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4544561IPR000967Zinc finger, NF-X1-type
CDDcd060081.39E-4591639No hitNo description
SMARTSM004380.34601619IPR000967Zinc finger, NF-X1-type
SMARTSM004380.02654684IPR000967Zinc finger, NF-X1-type
PfamPF014229.3E-4654669IPR000967Zinc finger, NF-X1-type
CDDcd060081.46E-4682731No hitNo description
PfamPF014224.5686712IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021693714IPR000967Zinc finger, NF-X1-type
PfamPF014241.5E-4821885IPR001374R3H domain
Gene3DG3DSA:3.30.70.3302.4E-4934979IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1126 aa     Download sequence    Send to blast
MSFPAQNNRR NNSSNRPRNN NNPVQSGVRR EWVARGSSTS TNAVSLSAAP VTPVATTTVV  60
TPGFGVNGRD NDNVSVAPVD WKRNQNQTYV EPKYNRGTYG NQRRERGRGR ESYNHQGNRM  120
ERLVRPINER INQERVKDPN LPQLVQEIEE KLLKGNVECM ICYDMVRRSA PIWSCSSCYS  180
IFHLSCTKKW ARAPTSVDTS AGKDQGFNWR CPGCQSVQLT SSREIRYLCF CGKRQDPSSD  240
LYLTPHSCGE PCGKKLEKEL PGNGLSEEDL CPHVCVLQCH PGPCPPCKAF APARSCPCGK  300
EVITTRCSDR KSALTCGQQC GKLLDCGRHR CEQTCHVGPC GHCQIVVNAH CFCKKKTESI  360
FCGDMGLKGD IKIEDGVFSC NSACGKKLNC GNHVCRELCH PGPCGDCALS PSKVKTCCCG  420
KTSLEEERQS CLDPIPTCSK VCGKSLRCGV HHCEAVCHSG DCAPCLVLVT QRCRCGSTSR  480
TVECYRTQAE DEKFTCDRPC GQKKNCGRHR CSERCCPLSN PRNSITGGWN PHFCSMPCEK  540
KLRCGQHSCE SLCHSGHCPP CLETIFTDLT CACGRTSIPP PLPCGTPLPS CQLPCSVSQP  600
CGHPPTHSCH FGDCLPCAVP VAKECVGGHV ILRNIPCGSK DIRCNKLCGK TRQCGLHACA  660
RTCHPSPCDV SAGPSNGSRA SCGQTCGAPR RDCRHTCTAL CHPSSPCPDV RCEFPVIITC  720
SCGRITANVP CDAGGQIVDT VFEASIIQKL PSPLQPIEIN GKKVPLGQRK LTCDDECAKM  780
EKKKVLSDAF GITPPNLEAL HLGENAAVSE VLGDLLRRDA KWVLSIEERC KFLVLGRSRG  840
GVNALKVHVF CPMSKEKRDA IRLIAARWKL SVNAAGWEPK RFIAVHVTPK SKAPTRILGT  900
KGTTVNNIAQ PAVFDYLVDM DPRLVVALFD MPRDADISAL VLRFGGECEL VWLNDKNALA  960
VFSDPARAAT AMRRLDQGSA YFGAAVVPQS GVASAVASTT NVWGVSGGAK DGGGVAALKG  1020
NPWKKAVVQE PHLRENPWDA EEWSNSPTDS VAPSAWKESE ATPAASSNRW SVLEPEITSS  1080
LPKASITIKE PVTETAVESS ISPPKPQDVG IDDMADVVDD WDKAYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384620.0AC238462.1 Solanum lycopersicum chromosome 3 clone C03HBa0203H10, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341494.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0V0IZ010.0A0A0V0IZ01_SOLCH; Putative NF-X1-type zinc finger protein NFXL1-like
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1